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oai:figshare.com:article/9122504 2019-08-21T03:18:26Z category_24454 portal_510 item_type_3 month_year_08_2019

Appendix D Endophytic fungi from cabbage in New Zealand 2016 Michal Kuchar (7033145) Other biological sciences not elsewhere classified endophytic fungi fungal isolates cabbage Brassica oleracea New Zealand cultivation 2016 ITS Biological Sciences not elsewhere classified Table of fungal isolates recovered from cabbage (Brassica oleracea var capitata) in New Zealand on February 2016. Columns contain a recorded value for variables:<br><br>frag_no - arbitrary tissue fragment numbering <br>region - regions in New Zealand where cabbage plants were sampled (Canterbury – h, Nelson – m and Pukekohe – a).<br>plant - arbitrary numbering of plants in given region<br>part - cabbage tissue R- root, S -stem, L - leaf<br>medium - cultivation medium - Potato dextrose agar (p), 1/4 strength potato dextrose agar (1), Sabouraud dextrose agar (s) and Aspergillus minimal medium (a)<br>well - arbitrary numbering of wels on cultivation plate<br>for plant2, part2, medium2 similar to above<br>fragment - code for tissue fragment from which given isolate originated<br>isolate - code for isolate<br>description of morphotypes<br>mycelium_color - colour of mycelium <br>mycelium_color_under - colour of the bottom of cultivation dish<br>mycelium_texture - texture of mycelim <br>sclerotia - whether present or not<br>spores - colour and texture of spores concentric on petri dish (conc), <br>media_coloring - colouring of the cultivation media by growing isolate<br> colours white (w), grey(g), green(gn), brown(b), yellow(yel), black (bl), purple (pu), orange (o), pink (pi), beige (be), dark(dk), light(li), pinch (P)<br> texture - fluffy (fl), growing in agar (ia), yeast-like (yes), chunky (ch) scant (s), compact (comp), flat(ft)<br> other abbreviations - somewhat (sw), in mycelium (im), vis (visible), dry (d), oozing (ooze), fragmente (frg), at the edge of colony (oe)<br><br>sequence - ITS sequence <br>MatchUNITE - match with UNITE database<br>identityUNITE - BLAST identity result for the best match with UNITE database<br>lengthUNITE - BLAST length result for the best match with UNITE database<br>lineageUNITE - taxonomy extracted from the best match with UNITE database<br>speciesUNITE - species extracted from the best match with UNITE database<br>genusUNITE- genus extracted from the best match with UNITE database<br>identityNCBI - BLAST identity result for the best match with NCBI database<br>MatchNCBI - BLAST identity result for the best match with NCBI database<br>speciesNCBI - species extracted from the best match with NCBI database<br>genusNCBI - genus extracted from the best match with NCBI database<br>lengthNCBI - BLAST length result for the best match with NCBI database<br>species - species name <br>genus - genus name <br>identity - BLAST identity result for the best match<br>blastlength - BLAST length result for the best match<br>seqlength - length of sequence<br>family - family name<br>order - order name<br>class - class name<br>phylum - phylum name 2019-08-21T03:18:26Z Dataset Dataset 10.25400/lincolnuninz.9122504.v1 https://figshare.com/articles/dataset/Appendix_D_Endophytic_fungi_from_cabbage_in_New_Zealand_2016/9122504 CC BY-NC-SA 4.0