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        <datestamp>2026-09-30T18:14:32Z</datestamp>
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          <dc:title>P(CA)&lt;sup&gt;2&lt;/sup&gt;: PCA-Based Cell Agglomeration for
CFD Simulations with Detailed Kinetic Mechanisms</dc:title>
          <dc:creator>Alberto Cuoci (1265661)</dc:creator>
          <dc:creator>Temistocle Grenga (17638623)</dc:creator>
          <dc:subject>Biophysics</dc:subject>
          <dc:subject>Biochemistry</dc:subject>
          <dc:subject>Physiology</dc:subject>
          <dc:subject>Evolutionary Biology</dc:subject>
          <dc:subject>Chemical Sciences not elsewhere classified</dc:subject>
          <dc:subject>Information Systems not elsewhere classified</dc:subject>
          <dc:subject>Mathematical Sciences not elsewhere classified</dc:subject>
          <dc:subject>Infectious Diseases</dc:subject>
          <dc:subject>Computational  Biology</dc:subject>
          <dc:subject>relevant principal components</dc:subject>
          <dc:subject>provides systematic control</dc:subject>
          <dc:subject>provides accurate solutions</dc:subject>
          <dc:subject>proven particularly effective</dc:subject>
          <dc:subject>principal component analysis</dc:subject>
          <dc:subject>effective overall speed</dc:subject>
          <dc:subject>asymptotic maximum allowed</dc:subject>
          <dc:subject>2 &lt;/ sup</dc:subject>
          <dc:subject>similar thermochemical states</dc:subject>
          <dc:subject>evolving thermochemical structure</dc:subject>
          <dc:subject>detailed kinetic mechanisms</dc:subject>
          <dc:subject>reduced space defined</dc:subject>
          <dc:subject>conventional ca algorithms</dc:subject>
          <dc:subject>ca )&lt; sup</dc:subject>
          <dc:subject>detailed chemical kinetics</dc:subject>
          <dc:subject>based cell agglomeration</dc:subject>
          <dc:subject>features make p</dc:subject>
          <dc:subject>proposed approach removes</dc:subject>
          <dc:subject>cell agglomeration</dc:subject>
          <dc:subject>proposed based</dc:subject>
          <dc:subject>thermochemical state</dc:subject>
          <dc:subject>detailed chemistry</dc:subject>
          <dc:subject>simulations based</dc:subject>
          <dc:subject>chemical step</dc:subject>
          <dc:subject>clustering features</dc:subject>
          <dc:subject>pca space</dc:subject>
          <dc:subject>techniques used</dc:subject>
          <dc:subject>splitting approach</dc:subject>
          <dc:subject>solution accuracy</dc:subject>
          <dc:subject>results show</dc:subject>
          <dc:subject>reacting flow</dc:subject>
          <dc:subject>promising tool</dc:subject>
          <dc:subject>nonchemistry fraction</dc:subject>
          <dc:subject>multidimensional simulations</dc:subject>
          <dc:subject>manual selection</dc:subject>
          <dc:subject>integrated together</dc:subject>
          <dc:subject>increasing complexity</dc:subject>
          <dc:subject>heuristic selection</dc:subject>
          <dc:subject>easily integrated</dc:subject>
          <dc:subject>dynamically updated</dc:subject>
          <dc:subject>cost associated</dc:subject>
          <dc:subject>computational cost</dc:subject>
          <dc:description>The inclusion of
detailed chemical kinetics in multidimensional
simulations of reactive flows remains computationally very demanding.
Among the techniques used to reduce the cost associated with detailed
chemistry, cell agglomeration (CA) has proven particularly effective
in simulations based on the operator-splitting approach, where cells
with similar thermochemical states are grouped and integrated together
during the chemical step. In this work, a new methodology for the
automatic selection of clustering variables in CA is proposed based
on principal component analysis (PCA). In the proposed P(CA)&lt;sup&gt;2&lt;/sup&gt; (PCA-based Cell Agglomeration) approach, the clustering is performed
in a reduced space defined by the most relevant principal components
of the thermochemical state. This removes the arbitrariness associated
with the manual selection of temperature and species mass fractions
typically used as clustering features in conventional CA algorithms.
Moreover, the PCA space is dynamically updated during the simulation,
allowing the clustering procedure to adapt to the evolving thermochemical
structure of the reacting flow. The P(CA)&lt;sup&gt;2&lt;/sup&gt; methodology
was assessed on an unsteady laminar coflow diffusion flame using kinetic
mechanisms of increasing complexity, including a mechanism with 224
species and 5939 reactions. The method was also tested on a temporally
evolving turbulent planar jet flame. The results show that P(CA)&lt;sup&gt;2&lt;/sup&gt; provides accurate solutions while achieving significant computational
acceleration, with effective overall speed-ups reaching approximately
70–80% of the asymptotic maximum allowed by the nonchemistry
fraction of the computational cost. The proposed approach removes
the need for heuristic selection of clustering variables, provides
systematic control of the solution accuracy, and can be easily integrated
into existing CFD solvers based on operator splitting. These features
make P(CA)&lt;sup&gt;2&lt;/sup&gt; a promising tool for accelerating simulations
of reactive flows involving detailed chemical kinetic mechanisms.</dc:description>
          <dc:date>2026-09-30T00:00:00Z</dc:date>
          <dc:type>Text</dc:type>
          <dc:type>Journal contribution</dc:type>
          <dc:identifier>10.1021/acs.energyfuels.6c02890.s001</dc:identifier>
          <dc:relation>https://figshare.com/articles/journal_contribution/P_CA_sup_2_sup_PCA-Based_Cell_Agglomeration_for_CFD_Simulations_with_Detailed_Kinetic_Mechanisms/34036605</dc:relation>
          <dc:rights>CC BY-NC 4.0</dc:rights>
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