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          <dc:title>&lt;p&gt;Newick string of the phylogenetic tree built with RAxML from all single-copy genes for 206 H. influenzae isolates, including bootstraps.&lt;/p&gt;</dc:title>
          <dc:creator>Jocelyn A. Hammond (25111760)</dc:creator>
          <dc:creator>Rachel L. Ehrlich (8293938)</dc:creator>
          <dc:creator>Ariel Gonzalez (22389474)</dc:creator>
          <dc:creator>Begoña Euba (563215)</dc:creator>
          <dc:creator>Kevin M. Raible (25111763)</dc:creator>
          <dc:creator>Jill M. Lawrence (25111766)</dc:creator>
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          <dc:creator>Jason Limbo (25111775)</dc:creator>
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          <dc:creator>Sergey V. Balashov (25111778)</dc:creator>
          <dc:creator>Azad Ahmed (121246)</dc:creator>
          <dc:creator>Junkal Garmendia (217415)</dc:creator>
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          <dc:creator>Garth D. Ehrlich (60143)</dc:creator>
          <dc:creator>Michael E. Pichichero (7880588)</dc:creator>
          <dc:creator>Ravinder Kaur (1871197)</dc:creator>
          <dc:creator>Joshua Chang Mell (7490840)</dc:creator>
          <dc:subject>Medicine</dc:subject>
          <dc:subject>Microbiology</dc:subject>
          <dc:subject>Genetics</dc:subject>
          <dc:subject>Biotechnology</dc:subject>
          <dc:subject>Evolutionary Biology</dc:subject>
          <dc:subject>Environmental Sciences not elsewhere classified</dc:subject>
          <dc:subject>Ecology</dc:subject>
          <dc:subject>Biological Sciences not elsewhere classified</dc:subject>
          <dc:subject>Cancer</dc:subject>
          <dc:subject>Infectious Diseases</dc:subject>
          <dc:subject>Virology</dc:subject>
          <dc:subject>sought new insights</dc:subject>
          <dc:subject>predicted functions consistent</dc:subject>
          <dc:subject>informed association tests</dc:subject>
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          <dc:subject>infected middle ears</dc:subject>
          <dc:subject>conferred alkaline sensitivity</dc:subject>
          <dc:subject>commonly afflicts children</dc:subject>
          <dc:subject>middle ear washes</dc:subject>
          <dc:subject>om ” operon</dc:subject>
          <dc:subject>div &gt;&lt; p</dc:subject>
          <dc:subject>clustered homologous genes</dc:subject>
          <dc:subject>bacterial disease burden</dc:subject>
          <dc:subject>haemophilus influenzae &lt;/</dc:subject>
          <dc:subject>om disease pathogenesis</dc:subject>
          <dc:subject>middle ear</dc:subject>
          <dc:subject>prone children</dc:subject>
          <dc:subject>alkaline tolerance</dc:subject>
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          <dc:subject>12 om</dc:subject>
          <dc:subject>significant difference</dc:subject>
          <dc:subject>selective advantage</dc:subject>
          <dc:subject>polyamine metabolism</dc:subject>
          <dc:subject>ph homeostasis</dc:subject>
          <dc:subject>persistent colonization</dc:subject>
          <dc:subject>otitis media</dc:subject>
          <dc:subject>nitrogen metabolism</dc:subject>
          <dc:subject>laboratory strain</dc:subject>
          <dc:subject>genome sequenced</dc:subject>
          <dc:subject>gene absences</dc:subject>
          <dc:subject>fold increase</dc:subject>
          <dc:subject>distinct lineages</dc:subject>
          <dc:subject>clonal lineages</dc:subject>
          <dc:subject>associated bacterium</dc:subject>
          <dc:subject>across assemblies</dc:subject>
          <dc:subject>9 healthy</dc:subject>
          <dc:description>&lt;p&gt;Newick string of the phylogenetic tree built with RAxML from all single-copy genes for 206 H. influenzae isolates, including bootstraps.&lt;/p&gt;</dc:description>
          <dc:date>2026-09-25T17:56:18Z</dc:date>
          <dc:type>Dataset</dc:type>
          <dc:type>Dataset</dc:type>
          <dc:identifier>10.1371/journal.ppat.1014649.s018</dc:identifier>
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