2026-10-07T23:34:42Z https://api.figshare.com/v2/oai

oai:figshare.com:article/33995778 2026-09-25T16:42:09Z category_30334 category_30331 category_30346 item_type_3 month_year_09_2026

Calcium imaging analysis pipeline Giovanni Hernandez (22360735) Cognitive neuroscience Behavioural neuroscience Social and affective neuroscience Miniscope mice python code <p dir="ltr">This repository contains the custom Python analysis routines and processing pipelines supporting the longitudinal single-cell calcium imaging data in:"Social Stress in Adolescence: A Longitudinal Analysis of Early Predictors and Outcomes" The pipeline processes in vivo single-cell calcium fluorescence data recorded via head-mounted UCLA Miniscopes (v3) in freely behaving mice undergoing operant conditioning and Go/No-Go cognitive testing. It bridges motion correction and spatial cell extraction from the Minian analysis pipeline with behavioral TTL synchronization, trial alignment, neural event deconvolution, cell tuning classification, and pairwise ensemble cross-correlation analysi</p> 2026-09-25T16:42:09Z Dataset Dataset 10.6084/m9.figshare.33995778.v1 https://figshare.com/articles/dataset/Calcium_imaging_analysis_pipeline/33995778 CC BY 4.0