2026-10-12T12:23:04Z https://api.figshare.com/v2/oai

oai:figshare.com:article/33976849 2026-09-23T17:47:53Z category_13 category_14 category_24 category_39 category_734 category_133 portal_5 item_type_3 month_year_09_2026

<p>We report the Average Triplet Scores (TS) of the species trees inferred by ASTRAL and by STELAR using gene trees rooted with different techniques (e.g., MP, MV, etc.). In each row (model condition), the best value is highlighted in boldface. For readability and comparability across datasets with different numbers of taxa and gene trees, TS values are normalized by the total number of possible triplets (i.e., multiplied by the number of gene trees) and reported to four decimal places. Boldface indicates the largest value in each row based on the underlying unrounded normalized scores; ties may appear due to rounding. Missing entries under RD and RD-EX indicate that corresponding MSAs were unavailable, preventing these methods from being run. Similarly, empty cells under MAD reflect the absence of branch lengths and support values.</p> Tanjeem Azwad Zaman (25099420) Rabib Jahin Ibn Momin (25099423) Md Shamsuzzoha Bayzid (3259023) Genetics Molecular Biology Evolutionary Biology Ecology Biological Sciences not elsewhere classified Plant Biology realistic model conditions provable statistical consistency model conditions exceeding incomplete lineage sorting gene tree heterogeneity rooted gene trees based method astral ils ), presents extensive empirical analysis gene tree rooting widely used quartet gene tree extensive research empirical datasets rooting techniques based methods systematics community significant challenge potential utility largely due induced triplets greatly understudied generally robust across simulated <p>We report the Average Triplet Scores (TS) of the species trees inferred by ASTRAL and by STELAR using gene trees rooted with different techniques (e.g., MP, MV, etc.). In each row (model condition), the best value is highlighted in boldface. For readability and comparability across datasets with different numbers of taxa and gene trees, TS values are normalized by the total number of possible triplets (i.e., multiplied by the number of gene trees) and reported to four decimal places. Boldface indicates the largest value in each row based on the underlying unrounded normalized scores; ties may appear due to rounding. Missing entries under RD and RD-EX indicate that corresponding MSAs were unavailable, preventing these methods from being run. Similarly, empty cells under MAD reflect the absence of branch lengths and support values.</p> 2026-09-23T18:06:49Z Dataset Dataset 10.1371/journal.pcbi.1014782.t004 https://figshare.com/articles/dataset/_p_We_report_the_Average_Triplet_Scores_TS_of_the_species_trees_inferred_by_ASTRAL_and_by_STELAR_using_gene_trees_rooted_with_different_techniques_e_g_MP_MV_etc_In_each_row_model_condition_the_best_value_is_highlighted_in_boldface_For_reada/33976849 CC BY 4.0