2026-10-13T13:36:48Z https://api.figshare.com/v2/oai

oai:figshare.com:article/33976840 2026-09-23T17:47:50Z category_13 category_14 category_24 category_39 category_734 category_133 portal_5 item_type_3 month_year_09_2026

<p>Properties of the simulated datasets. The level of ILS is represented by the average topological distance between the true gene trees and the true species tree. All datasets were simulated under the multispecies coalescent (MSC) model. Gene sequences were simulated and gene trees were estimated under time-reversible substitution models. RAxML [75] was used to infer gene trees.</p> Tanjeem Azwad Zaman (25099420) Rabib Jahin Ibn Momin (25099423) Md Shamsuzzoha Bayzid (3259023) Genetics Molecular Biology Evolutionary Biology Ecology Biological Sciences not elsewhere classified Plant Biology realistic model conditions provable statistical consistency model conditions exceeding incomplete lineage sorting gene tree heterogeneity rooted gene trees based method astral ils ), presents extensive empirical analysis gene tree rooting widely used quartet gene tree extensive research empirical datasets rooting techniques based methods systematics community significant challenge potential utility largely due induced triplets greatly understudied generally robust across simulated <p>Properties of the simulated datasets. The level of ILS is represented by the average topological distance between the true gene trees and the true species tree. All datasets were simulated under the multispecies coalescent (MSC) model. Gene sequences were simulated and gene trees were estimated under time-reversible substitution models. RAxML [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1014782#pcbi.1014782.ref075" target="_blank">75</a>] was used to infer gene trees.</p> 2026-09-23T18:06:49Z Dataset Dataset 10.1371/journal.pcbi.1014782.t001 https://figshare.com/articles/dataset/_p_Properties_of_the_simulated_datasets_The_level_of_ILS_is_represented_by_the_average_topological_distance_between_the_true_gene_trees_and_the_true_species_tree_All_datasets_were_simulated_under_the_multispecies_coalescent_MSC_model_Gene_s/33976840 CC BY 4.0