2026-10-13T16:06:00Z https://api.figshare.com/v2/oai

oai:figshare.com:article/33968175 2026-09-22T17:40:55Z category_4 category_146 category_24 category_734 category_931 category_61 portal_5 item_type_3 month_year_09_2026

<p>Computational efficiancy.</p> Jia Song (495396) Qunhua Li (484957) Biochemistry Space Science Evolutionary Biology Biological Sciences not elsewhere classified Information Systems not elsewhere classified Developmental Biology remains challenging due optimal transport framework enabling detailed characterization derive probabilistic correspondences capturing microenvironment context become increasingly important >- nearest neighbors measures gene expression st technologies advance div >< p knn achieves accurate multiple st platforms spot expression sparse expression st alignment truth alignment tissue organization spot using relying solely real datasets merfish ), known ground k </ geometric distortions developmental variation developmental stages biological heterogeneity <p>Running time in seconds for the DLPFC (10x Genomics Visium), mouse brain aging (MERFISH), axolotl telencephalon (Stereo-seq), and adult mouse brain (Illumina NextSeq 500) datasets using PASTE, DeST-OT, SLAT, Spateo, and OT-knn. PASTE, DeST-OT, Spateo, and OT-knn were executed on CPUs, whereas SLAT was executed using GPU acceleration. “NA” indicates that the method did not converge within the specified maximum number of iterations.</p> <p>(XLSX)</p> 2026-09-22T17:57:53Z Dataset Dataset 10.1371/journal.pcbi.1014041.s009 https://figshare.com/articles/dataset/_p_Computational_efficiancy_p_/33968175 CC BY 4.0