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        <datestamp>2026-09-21T04:28:52Z</datestamp>
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          <dc:title>Supplementary file 1_Fertilizer placement modulates the effects of soil metabolite formulations on nutrient status, phenylpropanoid–flavonoid metabolism, and sensory quality in flue-cured tobacco.docx</dc:title>
          <dc:creator>Xu Wei (2472718)</dc:creator>
          <dc:creator>Hongxun Li (17473590)</dc:creator>
          <dc:creator>Longchang Wang (13789513)</dc:creator>
          <dc:creator>Li Zhang (8200)</dc:creator>
          <dc:creator>Yechun Lin (4735206)</dc:creator>
          <dc:creator>Kai Cai (1344477)</dc:creator>
          <dc:creator>Shengqiang Peng (25079989)</dc:creator>
          <dc:creator>Jiawen Yuan (3122787)</dc:creator>
          <dc:creator>Lili Chen (66681)</dc:creator>
          <dc:creator>Yihe Sun (23665809)</dc:creator>
          <dc:subject>Plant Biology</dc:subject>
          <dc:subject>fertilizer placement</dc:subject>
          <dc:subject>flue-cured tobacco</dc:subject>
          <dc:subject>metabolomics</dc:subject>
          <dc:subject>sensory quality</dc:subject>
          <dc:subject>soil metabolite formulation</dc:subject>
          <dc:subject>transcriptomics</dc:subject>
          <dc:subject>well-cellar application</dc:subject>
          <dc:subject>WGCNA</dc:subject>
          <dc:description>Background&lt;p&gt;The quality of flue-cured tobacco depends on nutrient acquisition, carbon–nitrogen allocation, and quality-related secondary metabolism, particularly phenylpropanoid and flavonoid pathways. However, whether fertilizer placement and exogenous soil metabolite formulations can jointly improve leaf nutritional physiology and cured-leaf quality remains unclear.&lt;/p&gt;Methods&lt;p&gt;A field experiment was conducted with the flue-cured tobacco cultivar Yunyan 87 (Nicotiana tabacum L.). Six treatments combined two fertilizer placement methods, strip application and well-cellar application, with two soil metabolite formulations at the same total fertilizer application rate. Nitrogen, phosphorus, and potassium contents and the activities of polyphenol oxidase (PPO), phenylalanine ammonia-lyase (PAL), and sucrose-phosphate synthase (SPS) were determined in mature middle leaves. Sensory evaluation of cured leaves was integrated with transcriptomic, metabolomic, multi-omics, and weighted gene co-expression network analyses.&lt;/p&gt;Results&lt;p&gt;Compared with conventional strip application (CK1), well-cellar application (CK2) increased leaf nitrogen, phosphorus, and potassium contents by 4.45%, 7.57%, and 6.89%, respectively, with significant increases in nitrogen and potassium. Relative to CK2, A3 (well-cellar application with soil metabolite formulation 1) and A4 (well-cellar application with soil metabolite formulation 2) increased PPO activity by 29.49% and 28.16%, respectively, and PAL activity by 81.08% and 73.91%, respectively, whereas SPS activity showed only a non-significant upward trend. A3, which combined well-cellar application with soil metabolite formulation 1, showed the best overall sensory profile, with improved aroma quality, reduced irritancy and off-odors, and greater smoke softness. Transcriptomic and metabolomic analyses showed that treatment-responsive genes and metabolites were mainly associated with plant hormone signaling, photosynthesis, sugar and amino acid metabolism, and phenylpropanoid and flavonoid biosynthesis. Integrated omics analysis revealed treatment-dependent changes in phenylpropanoid–flavonoid metabolism. Weighted gene co-expression network analysis (WGCNA) identified a darkgreen module containing 4,363 genes that was significantly correlated with several flavonoid-related metabolites, including quercetin, kaempferol, myricetin, and 5,7-dihydroxyflavanone (r = 0.56–0.69), and eight candidate hub genes were identified.&lt;/p&gt;Conclusion&lt;p&gt;Well-cellar application combined with soil metabolite formulation 1 may improve nitrogen and potassium status in mature leaves and coordinate phenylpropanoid–flavonoid metabolism and quality-precursor accumulation, thereby enhancing the overall sensory quality of cured leaves. These findings highlight fertilizer placement as an important determinant of soil metabolite formulation performance and provide a theoretical basis for precision rhizosphere fertilization and the rational use of soil metabolite formulations in flue-cured tobacco production.&lt;/p&gt;</dc:description>
          <dc:date>2026-09-21T04:28:52Z</dc:date>
          <dc:type>Dataset</dc:type>
          <dc:type>Dataset</dc:type>
          <dc:identifier>10.3389/fpls.2026.1949823.s001</dc:identifier>
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          <dc:rights>CC BY 4.0</dc:rights>
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