2026-10-12T02:18:21Z https://api.figshare.com/v2/oai

oai:figshare.com:article/33941752 2026-09-22T04:05:22Z category_24892 item_type_3 month_year_09_2026

Supplementary Data:Identification and Characterization of Ovarian Extrachromosomal Circular Deoxyribonucleic Acid in Rats with Polycystic Ovary Syndrome Zhi Chen (222749) Hao Song (383912) Jun-jie Deng (25086397) Yuan-xue Wu (25087084) Tian-jiao Liu (25087087) Min Xia (25087088) Ao-lei Lin (25087090) Cheng Chen (25087093) Jun-yu Feng (25087095) Huan Yang (25087096) Other biomedical and clinical sciences not elsewhere classified eccdna ). ecDNA rat AChE <p dir="ltr">This dataset contains the supplementary data associated with the manuscript entitled “Identification and Characterization of Ovarian Extrachromosomal Circular Deoxyribonucleic Acid in Rats with Polycystic Ovary Syndrome,” submitted to Biology Direct.</p><p dir="ltr">Includes: (1) 14,987 eccDNA and 240 ecDNA elements identified by Circle-Map, along with raw counts and DESeq2-normalized counts for the samples and their associated genes (Supplementary Data 1); (2) Genes located on eccDNA/ecDNA with overlapping coordinates (Supplementary Data 2); and (3) BLAST alignments for rat ncRNA, lncRNA, snoRNA, mitochondrial tRNA (annotated by GTF), transposable elements (from UCSC RepeatMasker), and circular RNA (from CircAtlas) (Supplementary Data 3–8).</p><p dir="ltr">Each Excel workbook contains two sheets: “eccDNA” and “ecDNA.” The first row of each sheet describes the columns. Coordinates refer to the rat reference genome used in the relevant publications. A README file containing the complete data dictionary is included. Please refer to the relevant publications for the complete methodology and genome assembly versions.</p> 2026-09-22T04:05:22Z Dataset Dataset 10.6084/m9.figshare.33941752.v2 https://figshare.com/articles/dataset/Supplementary_data_eccDNA_ecDNA_landscape_and_its_associations_with_genes_and_RNA_elements_in_rat/33941752 CC BY 4.0