2026-10-13T23:51:49Z
https://api.figshare.com/v2/oai
oai:figshare.com:article/33939871
2026-09-18T17:53:58Z
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month_year_09_2026
<p>Complete per-domain classification of the archaeal proteome dataset.</p>
R. Dustin Schaeffer (669735)
Jimin Pei (481020)
Rui Guo (134395)
Jing Zhang (23775)
Kirill Medvedev (24259167)
Qian Cong (150388)
Nick Grishin (3418790)
Biophysics
Biochemistry
Cell Biology
Genetics
Molecular Biology
Evolutionary Biology
Ecology
Biological Sciences not elsewhere classified
Developmental Biology
Hematology
Infectious Diseases
Virology
structural novelty unknown
structural cluster context
groups defined across
folded structural orphans
divergent sequences rather
deepest phylogenetic distances
broadly conserved across
applied successive filters
457 ecod x
protein fold repertoire
structure prediction confidence
confidence structure predictions
proteins lacking high
ecod ).
protein length
confidence classification
yet account
unclassified fraction
systematic domain
small number
sequence comparison
roughly 40
results demonstrate
reducing 8
protein domains
novel structures
major lineages
level classification
known folds
group assignment
free proteins
evolutionary classification
domain level
domain classification
dataset ).
5 %),
452 domain
075 proteins
<p>One row per classified domain (204,758 domains across 115,623 proteins; 36 columns): domain and protein identifiers (with cross-reference to the published accession and the EPP resource), source organism and GTDB taxonomy, structure provenance (pre-existing AFDB / de novo AlphaFold3) and mean pLDDT, the ECOD X-/H-/T-group assignment with DPAM confidence and match scores, Pfam annotation, and sequence and structural cluster membership at protein and domain levels (PSC, PXC, DSC, DXC). A full column dictionary accompanies the file. The same table is deposited at Zenodo (DOI <a href="https://doi.org/10.5281/zenodo.21656443" target="_blank">10.5281/zenodo.21656443</a>).</p> <p>(GZ)</p>
2026-09-18T17:51:36Z
Dataset
Dataset
10.1371/journal.pcbi.1014188.s004
https://figshare.com/articles/dataset/_p_Complete_per-domain_classification_of_the_archaeal_proteome_dataset_p_/33939871
CC BY 4.0