2026-10-08T20:53:15Z https://api.figshare.com/v2/oai

oai:figshare.com:article/33930604 2026-10-07T13:53:42Z category_24184 item_type_3 month_year_10_2026

LinGraph graph zipped Wangfei Ma (25071613) Bioinformatic methods development pangenome graph demonstrates Structrual variant <p dir="ltr">This archive contains a precomputed LinGraph graph summary for reconstructing the local graphs used in structural variant calling, including challenging repetitive regions of the genome.</p><p dir="ltr">Download and extract the archive, then use LinGraph to reconstruct all local graphs from the summary. The reconstructed graphs can be used with LinGraph’s <code><strong>singular</strong></code><b> mode</b> to call and annotate variants in individual haplotype assemblies against a selected reference.</p><p dir="ltr">Variant calling also requires prepared query assemblies, the selected reference FASTA, and their corresponding <code>.fai</code> indexes. See the LinGraph README for installation, graph reconstruction, and variant-calling instructions.</p> 2026-10-07T13:53:42Z Dataset Dataset 10.6084/m9.figshare.33930604.v4 https://figshare.com/articles/dataset/LinGraph_graph_zipped/33930604 CC BY 4.0