2026-10-10T14:19:18Z https://api.figshare.com/v2/oai

oai:figshare.com:article/33777928 2026-09-15T08:28:16Z category_24271 category_24310 item_type_3 month_year_09_2026

Reproducibility Data for Evolutionary Expansion and Functional Retention of Immune-Related Duplicate Gene Families in Cyprinid Fishes Anjum Shahzad (23541772) Phylogeny and comparative analysis Genomics whole-genome duplications gene duplication study immune gene families Cyprinid fishes comparative genomics identified functional retention <p dir="ltr">This repository contains the processed datasets, intermediate analysis files, and computational scripts supporting the study <b>"Evolutionary Expansion and Functional Retention of Immune-Related Duplicate Gene Families Following Whole-Genome Duplication in Cyprinid Fishes."</b></p><p dir="ltr">The dataset provides the resources required to reproduce the comparative genomic, evolutionary, and functional analyses performed in this study. The repository includes OrthoFinder-based orthogroup assignments and gene count matrices, immune-related functional annotation results generated using eggNOG-mapper, processed duplication and synteny analysis outputs, Ka/Ks-based molecular evolution analyses, phylogenetic reconstruction files generated using IQ-TREE, functional enrichment results, CAFE5-related gene family evolution outputs, and custom Python scripts used for data processing and visualization.</p><p dir="ltr">Genome assemblies and protein sequence resources analyzed in this study were obtained from publicly available databases and were not redistributed in this repository. Corresponding genome accession numbers, assembly information, and database release details are provided in the included metadata file.</p><p dir="ltr">The provided files enable independent validation and reproduction of analyses investigating the expansion, retention, and functional diversification of immune-related duplicate gene families following whole-genome duplication in cyprinid fishes.</p> 2026-09-15T08:28:16Z Dataset Dataset 10.6084/m9.figshare.33777928.v1 https://figshare.com/articles/dataset/Reproducibility_Data_for_Evolutionary_Expansion_and_Functional_Retention_of_Immune-Related_Duplicate_Gene_Families_in_Cyprinid_Fishes/33777928 CC BY 4.0