2026-10-13T02:30:19Z https://api.figshare.com/v2/oai

oai:figshare.com:article/33732421 2026-09-14T11:21:43Z category_24310 item_type_3 month_year_09_2026

VIPerturb-seq Stage 7 custodian export v3: 20-cell and full-depth mean expression profiles Ziran Peng (24133968) Genomics perturb-seq CRISPR screen single-cell RNA sequencing genome-wide <p dir="ltr">Custodian export for Stage 7 of VIPerturb-seq (genome-wide), version 3.</p><p><br></p><p dir="ltr">This dataset contains two mean expression matrices computed from a genome-wide perturb-seq Seurat object, restricted to the 7501 genes present from the supplied gene list.</p><p><br></p><p dir="ltr">1. 20-cell output: for each of 6168 perturbations with at least 20 cells, the mean expression profile of 20 cells drawn by a rule fixed before any expression value was read. One control profile is also included (pseudo-control branch, 2000 cells, since fewer than 2000 non-targeting cells were available).</p><p><br></p><p dir="ltr">2. Full-depth output: for the 835 perturbations from the supplied target list that were eligible (at least 20 cells), the mean expression profile over all their cells.</p><p><br></p><p dir="ltr">No per-cell data and no held-out cells are included. Nothing in the output depends on the outcome.</p><p><br></p><p dir="ltr">Files:</p><p dir="ltr">- stage7_input_means.f32: raw little-endian float32, targets x genes, row major (6168 x 7501), 185,064,672 bytes</p><p dir="ltr">- stage7_input_full.f32: raw little-endian float32, targets x genes, row major (835 x 7501), 25,053,340 bytes</p><p dir="ltr">- stage7_input_meta.json: gene names, target names, cell counts, scalars</p><p dir="ltr">- run_v3.log: complete terminal output from the export</p><p><br></p><p dir="ltr">md5:</p><p dir="ltr">- stage7_input_means.f32: 8fd7d80103ab9df2d98ff94fc49a6f38</p><p dir="ltr">- stage7_input_full.f32: 579e0f2169d3a6f133b2312ea517c593</p><p dir="ltr">- stage7_input_meta.json: 53fc4dea3e3da868e73b0968e226dd09</p> 2026-09-14T11:21:43Z Dataset Dataset 10.6084/m9.figshare.33732421.v1 https://figshare.com/articles/dataset/VIPerturb-seq_Stage_7_custodian_export_v3_20-cell_and_full-depth_mean_expression_profiles/33732421 CC BY 4.0