2026-10-14T05:14:02Z https://api.figshare.com/v2/oai

oai:figshare.com:article/33684343 2026-09-12T21:30:29Z category_24193 category_24310 category_24295 item_type_3 month_year_09_2026

Crohn's fistula Xenium custom targeted panel spatial transcriptomics Atheer Alsayah (22655405) Genomics and transcriptomics Genomics Epigenetics (incl. genome methylation and epigenomics) Xenium spatial transcriptomics Crohn's disease single cell AnnData cell-cell communication Per-sample AnnData (.h5ad) objects of a custom targeted Xenium panel (480 genes, 541 total features including 61 negative control probes/codewords) spatial transcriptomics dataset of human intestinal fistula tissue. Converted from the Seurat object Data deposit and split into individual samples for method-benchmarking. Each file has raw counts (X), original metadata, and spatial cell centroids (obsm['spatial']). This dataset contains all 47 samples present in the RDS; RUN8 is not included. Source: Antanaviciute A. et al., 'Spatial fibroblast niches define Crohn's fistulae', Nature 2025, doi:10.1038/s41586-025-09744-y. Original deposit: Mendeley Data, 'Spatially Resolved Insights Into Fistulating Crohn's Disease Pathogenesis: Data Part 2', doi:10.17632/64fkdfcpzb.3 (CC BY 4.0). Redistributed under CC BY 4.0 with attribution. 2026-09-12T21:30:29Z Dataset Dataset 10.6084/m9.figshare.33684343.v1 https://figshare.com/articles/dataset/Crohn_s_fistula_Xenium_custom_targeted_panel_spatial_transcriptomics/33684343 CC BY 4.0