2026-10-12T04:44:48Z https://api.figshare.com/v2/oai

oai:figshare.com:article/33441295 2026-09-13T15:04:36Z category_24892 category_24193 item_type_3 month_year_09_2026

SNP MingRen Yang (14440983) Yu-Wei Wu (24063138) Duyen Thi Do (24713321) Other biomedical and clinical sciences not elsewhere classified Genomics and transcriptomics SNP Single Nucleotide Polymorphism <p dir="ltr">This project provides a reproducible pipeline for processing homologous genomic sequences and generating SNP datasets. Unaligned FASTA files are first organized in the TestData directory and aligned in batches using MAFFT through the aligned.sh script. The resulting multiple sequence alignments are stored in the aligned directory. SNP.py then identifies variable nucleotide positions and converts them into structured SNP outputs for downstream comparative genomics, phylogenetic analysis, and antimicrobial resistance research applications. <b>In September 2026, an </b><b><i>Escherichia coli</i></b><b> (</b><b><i>E. coli</i></b><b>) test dataset was added to support pipeline testing and validation.</b></p> 2026-09-13T15:04:36Z Dataset Dataset 10.6084/m9.figshare.33441295.v4 https://figshare.com/articles/dataset/SNP/33441295 CC BY 4.0