2026-10-07T03:18:38Z https://api.figshare.com/v2/oai

oai:figshare.com:article/33182840 2026-10-05T09:44:59Z category_23848 item_type_3 month_year_10_2026

Priloga F Lucija Luskar (24531713) Agricultural biotechnology not elsewhere classified Humulus lupulus L. GBS VCF <p dir="ltr">SLO: Datoteka vsebuje povzetek podatkov o polimorfizmih SNP za posamezne genotipe, pridobljenih iz datoteke VCF. Namen analize je oceniti kakovost, popolnost in genetsko variabilnost genotipskih podatkov med proučevanimi vzorci.</p><p dir="ltr">Za vsak genotip so prikazani ključni kazalniki, vključno s številom manjkajočih genotipov (missing data) in številom oziroma deležem heterozigotnih SNP mest (heterozygous sites). Manjkajoči podatki predstavljajo SNP pozicije, pri katerih genotipa zaradi nezadostne kakovosti, nizke pokritosti sekvenciranja ali drugih tehničnih razlogov ni bilo mogoče zanesljivo določiti. Heterozigotna mesta pa označujejo SNP lokuse, pri katerih sta prisotna dva različna alela, ter zato odražajo stopnjo genetske raznolikosti oziroma heterozigotnosti posameznega genotipa</p><p dir="ltr">EN: The file contains a summary of single-nucleotide polymorphism (SNP) data for individual genotypes, derived from a VCF (Variant Call Format) file. The purpose of the analysis is to assess the quality, completeness, and genetic variability of genotype data across the studied samples.</p><p dir="ltr">For each genotype, the file reports key metrics, including the number of missing genotype calls (missing data) and the number or proportion of heterozygous SNP sites. Missing data refer to SNP positions for which the genotype could not be assigned reliably, for example because of insufficient sequencing coverage, low data quality, or other technical limitations. Heterozygous sites represent SNP loci at which two different alleles are present and therefore reflect the level of genetic diversity, or heterozygosity, within an individual genotype.</p> 2026-10-05T09:44:59Z Dataset Dataset 10.6084/m9.figshare.33182840.v2 https://figshare.com/articles/dataset/SLO_Povzetek_SNP_podatkov_iz_VCF_datoteke_za_posamezne_genotipe_/33182840 CC BY 4.0