2026-10-09T11:22:40Z https://api.figshare.com/v2/oai

oai:figshare.com:article/32569260 2026-09-28T02:32:59Z category_24352 category_24193 category_24085 category_24205 item_type_3 month_year_09_2026

Public FDA MRSP-detection boundary benchmark derived package Cleverson de Souza (24129402) Bacteriology Genomics and transcriptomics Veterinary bacteriology Translational and applied bioinformatics Staphylococcus pseudintermedius MRSP WGS-AST pangenome mecA Microbial Genomics <p dir="ltr">Derived data and code supporting the Microbial Genomics manuscript MGEN-D-26-00487 (de Souza and Santoro).</p><p dir="ltr"><br></p><p dir="ltr">The current resubmission archive is MGEN_REPRODUCIBILITY_PACKAGE_20260927.zip (373,741,668 bytes; SHA-256: 0c9cf36312858a5e05a91c65fdad9f5ffa3ad91f2e03097ac35a4c34c47b31bf). It contains 594 files, including the September 2026 corrected training-only restricted-shell analysis, training-only pangenome dictionary, model input matrices, fitted models, frozen predictions, outcome extract, evaluation results, analysis code, provenance receipts, software records, a computational protocol and the current four main-figure PDFs.</p><p dir="ltr"><br></p><p dir="ltr">Start with README.md, COMPUTATIONAL_PROTOCOL.md, DISTRIBUTION_NOTE.md and POSTREVIEW_CLARIFICATIONS_20260927.md. The historical June materials and July repeated-split addendum are included within this comprehensive archive and are labelled separately from the corrected training-only analysis.</p><p dir="ltr"><br></p><p dir="ltr">This version clarifies that the Table S11 tie-resampling intervals combine group-resampling and tie-order variability and are descriptive, adds the supplementary-number crosswalk, and adds the current four main-figure PDFs. Figure 1 now labels the 2,279 genomes as candidate assemblies. Previously deposited scientific data, fitted models, frozen predictions, numerical results, executable scripts and frozen execution notes are unchanged from version 6. Current distribution checksums are provided in PAYLOAD_MANIFEST.json and SHA256SUMS.txt. Historical execution receipts retain their original run hashes; the distribution note explains documentation changes.</p><p dir="ltr"><br></p><p dir="ltr">The deposit supports checks from the deposited matrices and frozen predictions. Source genomes and the FDA workbook are not redistributed, raw per-assembly projection directories are not included, and HiPerGator-specific paths and execution bindings require adaptation. The computational protocol documents these reproducibility limits.</p> 2026-09-28T02:32:59Z Dataset Dataset 10.6084/m9.figshare.32569260.v7 https://figshare.com/articles/dataset/Public_FDA_MRSP-detection_boundary_benchmark_derived_package/32569260 CC BY 4.0