2026-10-14T05:33:44Z https://api.figshare.com/v2/oai

oai:figshare.com:article/32414829 2026-09-11T20:29:38Z category_24364 category_24217 category_24220 category_24199 item_type_3 month_year_09_2026

Data and code linked to the manuscript '<b>High nitrogen deposition is associated with phosphorus-efficient ectomycorrhizas in Europe's Scots pine forests</b>' Pierre Herinckx (23973246) Guillaume Delhaye (21705716) Martin I. Bidartondo (21336809) Laura M. Suz. (21336814) Mycology Community ecology (excl. invasive species ecology) Ecological physiology Sequence analysis ectomycorrhizas ITS sequencing functional traits biogeochemical cycles species distributions nitrogen phosphorus tree nutrition <p dir="ltr">Data and code associated with the manuscript '<b>High nitrogen deposition is associated with phosphorus-efficient ectomycorrhizas in Europe's Scots pine forests</b>'. Files include:</p><ul><li><u>Sequential bioinformatic workflow to generate the community data (OTU table) used in the study</u> :</li><li><ul><li><b><i>'1.bioinfo_pipeline_assemble_fasta.slurm'</i></b> produces the fasta file <b><i>'final.fasta'</i></b> containing sequences used for the assignment of species hypotheses;</li><li><b><i>'</i></b><b><i>2.bioinfo_pipeline_blast_denovo.slurm'</i></b> generates .uc files which are assembled in a final OTU table by the R code; <b><i>'</i></b><b><i>3.script_get_final_species_list.r'</i></b> and associated .csv files <b><i>'otu_checked.csv'</i></b> and <b><i>'sh_correction.csv'</i></b>.</li></ul></li><li><u>R code to produce the results presented in the manuscript, with associated full trait table and sites environmental data and metadata</u></li><li><ul><li><b><i>'</i></b><b><i>4.script_data_analysis.r'</i></b> combines OTU (<b><i>'otu.xlsx'</i></b>) and trait (<b><i>'traits_full_table.xlsx'</i></b>) data and produces the manuscript results (including supplementary tables and figures);</li><li><b><i>'sites.xlsx'</i></b> contains site environmental (e.g. N deposition) and host (foliar N:P) variables, and metadata (e.g. geographic coordinates,...).</li></ul></li></ul><p><br></p> 2026-09-11T20:29:38Z Dataset Dataset 10.6084/m9.figshare.32414829.v3 https://figshare.com/articles/dataset/Data_and_code_linked_to_the_manuscript_b_High_nitrogen_deposition_is_associated_with_phosphorus-efficient_ectomycorrhizas_in_Europe_s_Scots_pine_forests_b_/32414829 CC BY 4.0