2026-10-06T19:51:30Z https://api.figshare.com/v2/oai

oai:figshare.com:article/32315463 2026-09-26T13:54:14Z category_24370 category_24310 category_24208 category_24121 item_type_3 month_year_09_2026

Supporting data for genome sequence and phenotypic datasets for three calf-associated Parabacteroides isolates Hae-In Joe (23922321) Jae-Yun Lee (23926445) Hyun Sik Kim (23926633) Jin-Woo Bae (11213503) Microbiology not elsewhere classified Genomics Bioinformatics and computational biology not elsewhere classified Veterinary sciences not elsewhere classified Parabacteroides calf gut microbiota whole-genome sequencing genome assembly comparative genomics average nucleotide identity genome annotation antimicrobial resistance ResFinder VFDB antimicrobial susceptibility phenotypic dataset <p dir="ltr">This dataset contains supporting data files for the Data note entitled “Genome sequence and phenotypic datasets for three calf-associated <i>Parabacteroides </i>isolates.” The files provide processed genomic, comparative genomic, antimicrobial resistance screening, visualization, and methodology resources for <i>Parabacteroides </i>sp. KHUB-01, KHUB-02, and KHUB-03, which were recovered from feces of clinically healthy calves.</p><p dir="ltr">Files included:</p><p dir="ltr">Datafile_4_Summary of sequencing output, assembly features, genome quality, and annotation statistics for KHUB-01, KHUB-02, and KHUB-03.xlsx: Summary of sequencing output, assembly features, genome quality metrics, and genome annotation statistics for the three KHUB isolates.</p><p dir="ltr">Datafile_5_Comparative genome assembly quality metrics of KHUB-01, KHUB-02, KHUB-03, and publicly available <i>Parabacteroides </i>reference genomes.xlsx: Comparative genome assembly quality metrics for the KHUB isolates and publicly available <i>Parabacteroides </i>reference genomes.</p><p dir="ltr">Datafile_6_Assembly names and organism names of reference genomes included in the comparative genome analysis.xlsx: Assembly names and organism names of reference genomes used for comparative genomic analysis.</p><p dir="ltr">Datafile_7_ResFinder-based antimicrobial resistance gene hits identified in KHUB-01, KHUB-02, KHUB-03, and reference <i>Parabacteroides </i>genomes.xlsx: ResFinder-based antimicrobial resistance gene hits identified in the KHUB isolates and reference <i>Parabacteroides </i>genomes.</p><p dir="ltr">Datafile_8_Phylogenomic tree and average nucleotide identity heatmap for KHUB-01, KHUB-02, KHUB-03, and reference <i>Parabacteroides </i>genomes.tif: Phylogenomic tree and average nucleotide identity heatmap for the KHUB isolates and reference <i>Parabacteroides </i>genomes.</p><p dir="ltr">Datafile_9_Full methodology description.pdf: Full methodology description for isolate recovery, sequencing, genome assembly, polishing, quality assessment, annotation, comparative genomics, antimicrobial resistance screening, and antimicrobial susceptibility testing.</p> 2026-09-26T13:54:14Z Dataset Dataset 10.6084/m9.figshare.32315463.v1 https://figshare.com/articles/dataset/Supporting_data_for_genome_sequence_and_phenotypic_datasets_for_three_calf-associated_Parabacteroides_isolates/32315463 CC BY 4.0