2026-10-14T06:20:45Z https://api.figshare.com/v2/oai

oai:figshare.com:article/32226984 2026-09-17T13:32:55Z category_24193 category_24199 category_24310 item_type_3 month_year_09_2026

Genome assembly and annotation files for wild diploid potato <i>Solanum neocardenasii</i> CIP764035 (C868) Shuo Zhao (23859453) Genomics and transcriptomics Sequence analysis Genomics Potato Solanum tuberosum Genome assembly Genome annotation Haplotype-resolved <p dir="ltr">This dataset presents a high-quality, haplotype-resolved genome assembly for the wild diploid potato <i>Solanum neocardenasii</i> CIP764035 (<b>C868)</b>. The assembly includes chromosome-level sequences (Fasta format), and the annotation includes gene models (GFF3), coding sequences (CDS), and protein sequences (PEP). These files serve as a resource for genetic and genomic studies of potato.</p><p dir="ltr"><b>File Informations:</b></p><p dir="ltr">C868.H1.all.gff3.gz — Comprehensive GFF3 file containing all gene annotations and features for Hap1 (C868.H1).</p><p dir="ltr">C868.H1.longest.gff3.gz — Filtered GFF3 file containing only the gene annotations for the longest transcripts of each gene in Hap1 (C868.H1).</p><p dir="ltr">C868.H1.chr.fa.gz — Compressed FASTA file containing the chromosomal genome sequences for Hap1 (C868.H1).</p><p dir="ltr">C868.H1.longest.cds.fa.gz — FASTA file containing the coding sequence (CDS) of the longest transcripts for each gene in Hap1 (C868.H1).</p><p dir="ltr">C868.H1.longest.pep.fa.gz — FASTA file containing the protein sequences of the longest transcripts for each gene in Hap1 (C868.H1).</p><p dir="ltr">C868.H2.all.gff3.gz — Comprehensive GFF3 file containing all gene annotations and features for Hap2 (C868.H2).</p><p dir="ltr">C868.H2.longest.gff3.gz — Filtered GFF3 file containing only the gene annotations for the longest transcripts of each gene in Hap2 (C868.H2).</p><p dir="ltr">C868.H2.longest.pep.fa.gz — FASTA file containing the protein sequences of the longest transcripts for each gene in Hap2 (C868.H2).</p><p dir="ltr">C868.H2.chr.fa.gz — Compressed FASTA file containing the chromosomal genome sequences for Hap2 (C868.H2).</p><p dir="ltr">C868.H2.longest.cds.fa.gz — FASTA file containing the coding sequence (CDS) of the longest transcripts for each gene in Hap2 (C868.H2).</p><p dir="ltr">C868.H1.C868.H2.syri.vcf — VCF file containing structural variants and genomic rearrangements identified between Hap1 (C868.H1) and Hap2 (C868.H2) using SyRI.</p><p dir="ltr">C868.H1.gff.sum.txt — Summary statistics of the gene annotation for Hap1 (C868.H1).C868.H2.gff.sum.txt — Summary statistics of the gene annotation for Hap2 (C868.H2).</p> 2026-09-17T13:32:55Z Dataset Dataset 10.6084/m9.figshare.32226984.v4 https://figshare.com/articles/dataset/Genome_assembly_and_annotation_files_for_C868/32226984 CC BY 4.0