2026-10-07T12:19:56Z https://api.figshare.com/v2/oai

oai:figshare.com:article/32020035 2026-10-05T08:53:49Z category_23848 category_24310 category_24382 item_type_3 month_year_10_2026

Genome assembly and annotation dataset for Raphanus sativus (RSaok_v1) Goro Masuda (23589757) Akito Hosoi (23595949) Kenji Komatsu (23595951) Yuki Mitsui (23595954) Yuko Arai-Kichise (512007) Asuka Kamio (3236595) Rahul Sk (21084451) Hiroto Sekitoh (23595961) Miho Ozeki (23595963) Takashi Matsumoto (5861) Shunsuke Yajima (7370926) Tomomi Tadokoro (23589754) Agricultural biotechnology not elsewhere classified Genomics Plant cell and molecular biology Genome assembly Raphanus sativus Chromosome-scale Nanopore sequencing Optical genome mapping Gene annotation Radish Daikon Aokubi Doubled haploid <p dir="ltr">This dataset provides the genome assembly and annotation data supporting the article "Chromosome-scale reference genome assembly of an Aokubi Raphanus sativus doubled haploid line" (Scientific Data).</p><p dir="ltr">Related public records: BioProject PRJDB40705; BioSample SAMD01836765; raw Oxford Nanopore reads, DDBJ Sequence Read Archive DRR1048479; genome assembly and gene annotation, DDBJ/ENA/GenBank AP048637–AP048728.</p><p dir="ltr">Files include the genome assembly (92 sequences, 476.1 Mb), protein-coding gene models (40,973 genes; GFF3) with the corresponding protein sequences, functional annotation, transposable element annotation, Bionano optical genome maps and molecule data, and the PECAT configuration file used for the de novo assembly. Sequence names and gene IDs correspond to the DDBJ records; see README.txt for details.</p><p dir="ltr">Version history</p><p dir="ltr">Version 3 (October 2026): Corrected the contact e-mail address in README.txt.</p><p dir="ltr">Version 2 (October 2026): Removed outdated product and note attributes from CDS and exon features in RSaok_v1_gene_models.gff3.gz; product names are now given on mRNA features only, identical to the DDBJ records. README updated accordingly.</p><p dir="ltr">Version 1 (October 2026): Initial release.</p> 2026-10-05T08:53:49Z Dataset Dataset 10.6084/m9.figshare.32020035.v3 https://figshare.com/articles/dataset/Genome_assembly_and_annotation_dataset_for_Raphanus_sativus_RSaok_v1_/32020035 CC BY 4.0