- `notebooks/classifying_attractors.ipynb` produces the main part of Fig. 2 and Fig. S1 along with performance measurements on the needed calculations.

- `notebooks/example_networks.ipynb` produces the example networks shown in Figures 2, 3 and S4.

- `notebooks/kymographs.ipynb` produces all kymographs in Figures 1, 4 and 6.

- `notebooks/error_correcting.ipynb` produces all the network and splitting probability diagrams and coherence time plots for error correcting shown in Figures 5, S2, S3 and S6.

- `notebooks/FSMs.ipynb` produces the analysis of finite state machines, specifically the full network vizualizations from Fig. 6 (a) and the analysis needed for Figures S7 and S8.

- `notebooks/relaxation_dynamics.ipynb` produces the data and plots for relaxation kinetics and coherence times shown in Fig. 4.

- `notebooks/relaxation_dynamics_SI.ipynb` produces the relaxation kinetics analysis for Fig. S5.