2026-10-13T16:45:09Z https://api.figshare.com/v2/oai

oai:figshare.com:article/30772523 2026-09-18T15:27:51Z category_24193 item_type_3 month_year_09_2026

Chromosome-level haplotype-resolved genome assembly of the traditional Chinese medicinal plant Mu-Tou-Hui (Patrinia heterophylla) Shijie Wei (22769402) Genomics and transcriptomics haplotype-resolved genome De novo assempbly <p dir="ltr">This document comprises the supplementary data for our submitted manuscript titled "Chromosome-level haplotype-resolved genome assembly of the traditional Chinese medicinal plant Mu-Tou-Hui (<i>Patrinia heterophylla</i>)." Here, we report the first chromosome-scale haplotype-resolved genome assembly for <i>P. heterophylla</i>, generated using PacBio HiFi long-read sequencing and Hi-C technology. The assembly comprises two haplotypes: 554.92 Mb (haplotype A) and 555.88 Mb (haplotype B). In total, 28,306 protein-coding genes (26,260 functionally annotated) and 28,576 (26,516 functionally annotated) were annotated in haplotypes A and B, respectively. Furthermore, we annotated 334.17 Mb of repetitive elements and 3,224 non-coding RNAs in haplotype A, compared to 347.57 Mb and 3,328 in haplotype B. This high-quality genomic resource will facilitate future genetic studies and biotechnological applications in medicine, food, and horticulture. This supplementary data package includes 10 files: hapA_all.fa, hapB_all.fa, hapA_chr.fa, and hapB_chr.fa contain the assembly results for the two haplotypes; hapA.gff3 and hapB.gff3 provide the functional annotation results; hapA.CDS.fa and hapB.CDS.fa comprise the coding sequences for each haplotype; and hapA_pep.fa and hapB_pep.fa present the protein sequences encoded by the genes of the respective haplotypes.</p> 2025-12-03T08:59:36Z Dataset Dataset 10.6084/m9.figshare.30772523.v3 https://figshare.com/articles/dataset/Chromosome-level_haplotype-resolved_genome_assembly_of_the_traditional_Chinese_medicinal_plant_Mu-Tou-Hui_Patrinia_heterophylla_/30772523 CC BY 4.0