Prophages identified in bacterial genomes following long-read sequencing using Phastest (v3.0) and Cenote-Taker 3 (v3.0.0b74, database version 228), from which unique putative prophage regions were screened using CheckV (v1.0.3), including only those identified as “intact” or “high quality” based on their completeness scores.The first three letters correspond to the unique last three letters of the nine KL16 KPSC strains in the analysis, followed by the contig in which the prophage sequence was identified, and its number/ID.
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