2026-10-10T06:00:41Z https://api.figshare.com/v2/oai

oai:figshare.com:article/28850993 2026-09-18T15:47:21Z category_30692 category_31034 category_30950 portal_1059 item_type_3 month_year_09_2026

Data from: Avirulence genes of <i>Magnaporthe oryzae</i> are a pathogen defense arsenal shaped by cognate rice resistance genes in the field Xueyan Wang (24885608) Grant Billings (17362792) Amanda Hulse-Kemp (17362759) Quentin D. Read (17362630) Yeshi Wamishe (24885618) Barbara Valent (22891220) Yulin Jia (76974) Melissa Jia (24885653) Yixiao Huang (24885652) Crop and pasture protection (incl. pests, diseases and weeds) Genetics Sequence analysis rice blast pathosystem Avirulence genes oryza sativa evolutionary arms-race longitudinal pathogen survey Generalized Linear Modeling resistance gene rice blast fungus Pyricularia oryzae <p dir="ltr">The <i>Pyricularia oryzae</i> ‘70-15’ v3.0 (Dean et al, 2005) genome assembly and annotation files were downloaded from MycoCosm (Grigoriev et al, 2014). All the pathogen (<i>P. oryzae</i>) shotgun sequencing samples with collection dates, locations, and with “rice” listed as host were downloaded from the NCBI Sequence Read Archive (329 samples). Reads were trimmed using fastp v0.23.4 (Chen, 2023) and then aligned to the reference genome sequence using bwa-mem2 v2.2.1 (Vasimuddin et al, 2019). Alignments were sorted using samtools v1.20 and then fed through the bcftools v1.21-106-g2d84e07e mpileup-call pipeline (Danecek et al, 2021) to generate joint reference and variant calls at every reference genome position for all resequencing libraries.</p> 2026-09-18T15:47:21Z Dataset Dataset 10.15482/USDA.ADC/28850993.v1 https://figshare.com/articles/dataset/Data_from_Avirulence_genes_of_i_Magnaporthe_oryzae_i_are_a_pathogen_defense_arsenal_shaped_by_cognate_rice_resistance_genes_in_the_field/28850993 CC0