2026-10-13T06:56:22Z https://api.figshare.com/v2/oai

oai:figshare.com:article/28462349 2026-09-29T19:00:53Z category_24205 category_24298 category_24748 item_type_3 month_year_09_2026

Files for Cluster replicability in single-cell and single-nucleus atlases of the mouse brain Leon French (632317) Translational and applied bioinformatics Gene expression (incl. microarray and other genome-wide approaches) Neurosciences not elsewhere classified snRNASeq scRNASeq replicability assessment <p dir="ltr">Additional large data files from "Cluster replicability in single-cell and single-nucleus atlases of the mouse brain." Smaller files are in the <a href="https://github.com/gillislab/mouse_brain_cluster_replicability/" target="_blank" rel="noreferrer">github repo</a>.</p><p dir="ltr">The merged_Zeng_AWS.Oct2023.pretrained_* files are the Metaneighbor pretrained models.</p><p dir="ltr">Full paths for files from the data folder:<br>/whole_mouse_brain/processed/macosko/merged_Zeng_AWS.Oct2023.pretrained_Macosko.csv.gz<br>/whole_mouse_brain/processed/zeng/merged_Zeng_AWS.Oct2023.pretrained_Zeng.csv.gz<br>/whole_mouse_brain/processed/barseq/barseq_210630.rds<br>/whole_mouse_brain/zeng/from_API/ccf_coordinates_MERFISH-C57BL6J-638850.csv.gz</p><p dir="ltr"><br>Full paths for files from the results folder:<br>/MERFISH500/Macosko_predictions/joined_scores.df.full.csv.gz (scripts load expanded file)</p><p dir="ltr">/marker_results/markers_on_Macosko.1712974391.csv.gz<br>/marker_results/markers_on_Zeng.1713323744.csv.gz</p><p dir="ltr">/full_run_ZengAWS.1698256033/aurocs_full.asymmetric.csv.gz<br>/full_run_ZengAWS.1698256033/spatial_per_cell_data.972_pairs.csv.gz<br>/full_run_ZengAWS.1698256033/spatial_per_cell_data.612_pairs.csv.gz<br>/full_run_ZengAWS.1698256033/spatial_per_cell_data.2009_pairs.csv.gz<br>/full_run_ZengAWS.1698256033/aurocs_full.csv.gz</p><p dir="ltr">/MetaMarkers_2009_reciprocals/MetaMarkers_default_recurrence_2.csv.gz #Metamarkers that reoccur in both sides of the 2,009.</p><p dir="ltr">2026 update - added centroids:<br>Macosko_Mouse_Atlas_Single_Nuclei.Use_Backed.log2_cpm.mean_centroids.csv.gz<br>AIT21.0.merged.with_multiome.log2_cpm.mean_centroids.csv.gz</p> 2025-02-21T20:52:45Z Dataset Dataset 10.6084/m9.figshare.28462349.v3 https://figshare.com/articles/dataset/Files_for_Cluster_replicability_in_single-cell_and_single-nucleus_atlases_of_the_mouse_brain/28462349 CC BY 4.0