2026-05-29T20:38:11Z https://api.figshare.com/v2/oai
oai:figshare.com:article/22183891 2024-01-09T14:33:08Z category_24748 category_24316 portal_549 item_type_3 month_year_01_2024
10.5522/04/22183891.v1 https://figshare.com/articles/dataset/MAGICC_vertex-level_gene_expression_data/22183891 https://ndownloader.figshare.com/files/39446125 10.7554/eLife.86933.1 Wagstyl, Konrad Konrad Wagstyl Adler, Sophie Sophie Adler Vandekar, Simon Simon Vandekar Seidlitz, Jakob Jakob Seidlitz Mallard, Travis T. Travis T. Mallard Dear, Richard Richard Dear DeCasien, Alex R. Alex R. DeCasien 0000-0002-6205-5408 Satterthwaite, Theodore D. Theodore D. Satterthwaite Liu, Siyuan Siyuan Liu Vertes, Petra Petra Vertes 0000-0002-0992-3210 Shinohara, Russel T. Russel T. Shinohara Alexander-Bloch, Aaron Aaron Alexander-Bloch Geschwind, Daniel H. Daniel H. Geschwind Raznahan, Armin Armin Raznahan <![CDATA[MAGICC vertex-level gene expression data]]> Neurosciences not elsewhere classified Neurogenetics Cerebral cortex Gene expression Atlases MAGICC Neuroscience Neurogenetics 2024-01-09 2024-01-09 Dataset 2024 University College London Vertex-level expression data from the Multiscale Atlas of Gene Expression for Integrative Cortical Cartography

Files include:

Template cortical surface meshes for flat, inflated and very_inflated surfaces with 32k vertices

fs_LR.32k.L.flat.surf.gii

fs_LR.32k.L.inflated.surf.gii

fs_LR.32k.L.very_inflated.surf.gii

Glasser_2016.32k.L.label.gii - parcellation of fs_LR 32k surface according to Glasser et al., 2016 Nature.

ahba_vertex.npy - Atlas of cortical gene expression for 20,781 genes at 32k vertex locations

ahba_vertex_gradients.npy - Atlas of cortical gene expression gradients for 20,781 genes at 32k vertex locations

SuppTable2.csv - Gene-level characterisations for 20,781 in the same order as the above files. Includes gene symbol, alongside many other annotations described in the manuscript.

Example to code to analyse these data can be found at:
https://github.com/kwagstyl/magicc

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