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              <familyName>Tsaliki</familyName>
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              <givenName>Jennifer</givenName>
              <familyName>Roe</familyName>
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              <creatorName>Pollara, G</creatorName>
              <givenName>G</givenName>
              <familyName>Pollara</familyName>
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              <creatorName>Sun, Yuxin</creatorName>
              <givenName>Yuxin</givenName>
              <familyName>Sun</familyName>
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              <creatorName>Heather, James</creatorName>
              <givenName>James</givenName>
              <familyName>Heather</familyName>
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              <creatorName>Lipman, Marc</creatorName>
              <givenName>Marc</givenName>
              <familyName>Lipman</familyName>
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              <givenName>Benny</givenName>
              <familyName>Chain</familyName>
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              <givenName>Mahdad</givenName>
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          <titles>
            <title><![CDATA[Persistent T Cell Repertoire Perturbation and T Cell Activation in HIV After Long Term Treatment]]></title>
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          <subjects>
            <subject>Bioinformatics and computational biology not elsewhere classified</subject>
            <subject>Gene expression (incl. microarray and other genome-wide approaches)</subject>
            <subject>Immunology not elsewhere classified</subject>
            <subject>Infectious diseases</subject>
            <subject>T cell receptor repertoire</subject>
            <subject>HIV</subject>
            <subject>Antiretroviral therapy</subject>
            <subject>T cell activation</subject>
            <subject>cdr3-sequences</subject>
            <subject>Bioinformatics</subject>
            <subject>Computational  Biology</subject>
            <subject>Gene Expression (incl. Microarray and other genome-wide approaches)</subject>
            <subject>Immunology</subject>
            <subject>Infectious Diseases</subject>
          </subjects>
          <dates>
            <date dateType="Created">2021-07-12</date>
            <date dateType="Updated">2023-05-31</date>
          </dates>
          <resourceType resourceTypeGeneral="Dataset">Dataset</resourceType>
          <publicationYear>2021</publicationYear>
          <publisher>University College London</publisher>
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            <description descriptionType="Abstract"><![CDATA[<div>T cell receptor sequence data of 26 people living with HIV on long-term anti-retroviral therapy, and 12 HIV-negative healthy controls, produced using the UCL Chain lab protocol. All participants were Caucasian male adults recruited from London, UK. People living with HIV were on anti-retroviral therapy for a median of 8.5 years (interquartile range 3-16 years). They had undetectable plasma HIV viral load (<40 copies/ml) and median circulating CD4 counts of 703 cells/microliter (interquartile range 491-841 cells/microliter).</div><div>Details of the study are provided in Turner et al, Front Immunol 2021 (10.3389/fimmu.2021.634489).</div><div>The processed data files were generated using Demultiplexor, Decombinator and Collapsinator modules v3.1 (https://github.com/JamieHeather/Decombinator) and CDR3translator module v4 (https://github.com/innate2adaptive/Decombinator).</div><div>The raw data files are available at the NCBI Sequence Read Archive, accession number PRJNA613091.</div>]]></description>
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