2026-10-15T15:29:17Z https://api.figshare.com/v2/oai

oai:figshare.com:article/13246817 2020-11-23T13:01:15Z category_24358 portal_803 item_type_3 month_year_11_2020

Gold Stamp IDs to SRA IDs convertion of the metagenomes of GEMs Moritz Buck (9386817) Microbial ecology microbiome MAGs metagenome bioinformatics databases Microbial Ecology A small simple JSON-file containing the mapping from Gold Stamp IDs from the IMG/JGI database to the SRA IDs useable by fastq-dump to download the corresponding metagenomes from NCBI. <div>The GoldIDs are the ones from the Supplemental Table 1 from <i>Nayfach, S., Roux, S., Seshadri, R. et al. A genomic catalog of Earth’s microbiomes. Nat Biotechnol (2020). <a href="https://doi.org/10.1038/s41587-020-0718-6" rel="nofollow">https://doi.org/10.1038/s41587-020-0718-6</a></i>, that have been submited to the Short Read Archive. </div><div>The code used to generate this mapping is available at https://github.com/moritzbuck/jgi2sra_mapper</div><p></p> 2020-11-23T13:01:15Z Dataset Dataset 10.17044/scilifelab.13246817.v1 https://figshare.com/articles/dataset/Gold_Stamp_IDs_to_SRA_IDs_convertion_of_the_metagenomes_of_GEMs/13246817 GPL 3.0+